As I stood in my kitchen, the enticing scent of cinnamon wafted through the air, instantly transporting me back to cherished mornings filled with laughter and shared treats. Today, I’m excited to share my recipe for Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins, a delightful twist on a classic favorite. These muffins not only boast a fluffy texture and a hint of sweetness, but they also feature a creamy layer of indulgent cream cheese topped with a crunchy cinnamon crumble—perfect for elevating both breakfast and cozy tea time. The best part? They’re quick to whip up and satisfyingly guilt-free, making them the ideal solution for anyone striving for homemade goodness over fast food. Ready to turn your kitchen into a comforting haven of deliciousness? Let’s dive in!

Why Choose Gluten Free Coffee Cake Muffins?
Wholesome, Flavor-Packed Treat: These muffins offer a delightful marriage of rich, creamy cheese and warm cinnamon, creating a flavor explosion that rivals any coffee shop version.
Quick and Easy: With straightforward steps, you’ll have these delectable muffins ready in no time, making them perfect for busy mornings or unexpected guests.
Guilt-Free Indulgence: Enjoy the sweet, satisfying taste without the gluten, making them a fantastic choice for those with dietary necessities. Consider pairing them with Buttermilk Pancakes Breakfast for a delightful brunch experience!
Versatile Variations: Experiment with seasonal fruits or flavored yogurts to add your personal touch, ensuring every batch stays exciting and unique.
Bake Once, Enjoy All Week: Store them in an airtight container for 2 days or pop them in the fridge for up to a week—perfect for a quick, comforting snack whenever cravings hit.
Gluten Free Coffee Cake Muffin Ingredients
For the Muffins
• 1 egg – Provides structure and moisture; substitute with 1/4 cup unsweetened applesauce for a vegan option.
• ¼ cup brown sugar – Adds sweetness and moisture; light brown sugar can be used if necessary.
• ¼ cup sugar – Enhances sweetness; can be reduced for a less sweet muffin.
• ¼ cup Greek yogurt – Contributes moisture and richness; substitute with sour cream for a similar texture.
• 2 tablespoons oil (avocado or olive) – Provides fat for moisture; melted coconut oil can be used instead.
• 2 tablespoons butter (melted) – Adds flavor; substitute with dairy-free margarine for a vegan option.
• 3 tablespoons milk – Keeps muffins moist; use almond milk or any plant-based milk for a dairy-free version.
• ½ teaspoon vanilla extract – Enhances the flavor profile; ensure quality for the best taste.
• 1 cup Bob’s Red Mill 1 to 1 gluten free flour – Gives structure; ensure it’s gluten-free for the best results.
• ¼ teaspoon baking soda – Provides rise; essential for leavening with no substitutes recommended.
• ½ teaspoon baking powder – Another leavening agent; vital for fluffiness and no substitutes recommended.
• ¼ teaspoon salt – Enhances flavor; essential to balance sweetness.
• ¼ teaspoon nutmeg – Adds depth of flavor; can be replaced with allspice for a different twist.
• ¼ teaspoon Ceylon cinnamon – Sweeter and less harsh than regular cinnamon; flavor will differ if using regular.
For the Cream Cheese Layer
• 4 oz cream cheese – The creamy filling that adds richness; substitute with plant-based cream cheese for a dairy-free option.
• 3 tablespoons sugar – Sweetens the cream cheese layer; can be reduced or substituted with honey or agave.
For the Crumble Topping
• ½ cup Bob’s Red Mill 1 to 1 gluten-free flour – Provides structure in the crumble; no substitutes advised to maintain texture.
• ¼ cup brown sugar – Sweetens the topping; can be substituted with coconut sugar for a healthier option.
• 1 ½ teaspoon Ceylon cinnamon – Adds flavor to the crumble; regular cinnamon is acceptable but will alter the taste.
• ¼ cup butter (for crumble) – Adds richness and helps achieve a crumbly texture; dairy-free margarine can be used as a substitute.
Step‑by‑Step Instructions for Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins
Step 1: Preheat the Oven
Start your journey by preheating the oven to 350°F (175°C). While the oven warms up, line a 6-count large muffin tin with paper liners. This preparation step sets the stage for baking, ensuring that your Gluten Free Coffee Cake Muffins bake evenly and are easy to remove.
Step 2: Mix the Wet Ingredients
In a stand mixer, combine 1 egg, both sugars, Greek yogurt, oil, melted butter, milk, and vanilla extract. Mix on medium speed until the mixture is smooth and well combined, around 2-3 minutes. You’ll know it’s ready when everything is blended into a creamy batter, which adds moisture and flavor to your muffins.
Step 3: Prepare the Dry Ingredients
In a separate bowl, whisk together the gluten-free flour, baking soda, baking powder, salt, nutmeg, and Ceylon cinnamon. This step is crucial as it ensures a uniform blend of the dry ingredients, which will provide the necessary rise and flavor to your Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins.
Step 4: Combine Wet and Dry Mixtures
Slowly add the dry mixture to the wet mixture in the stand mixer, mixing on low speed. Blend just until combined, about 30 seconds to 1 minute. Be careful not to overmix; your batter should be slightly lumpy. This technique preserves the light and fluffy texture essential for these delightful muffins.
Step 5: Spoon the Batter
Using a spoon or ice cream scoop, fill each muffin liner about halfway with the prepared batter. This is important, as you need space for the cream cheese layer and crumble topping. Prepare to watch these muffins rise beautifully in the oven!
Step 6: Create the Cream Cheese Layer
In a separate bowl, combine the cream cheese, an egg, and sugar. Mix until slightly lumpy, which ensures a rich, creamy filling that will give depth to your muffins. Dollop this mixture generously on top of each muffin batter, creating a luscious layer of creaminess.
Step 7: Make the Crumble Topping
In another bowl, mix together the gluten-free flour, brown sugar, Ceylon cinnamon, and butter until the mixture resembles wet sand. This pristine crumble topping will create a nice crunchy layer on your muffins, adding that classic coffee cake texture we all adore.
Step 8: Add the Crumble Topping
Sprinkle the prepared crumble evenly over the cream cheese layer on each muffin. This step layers flavor and texture, ensuring that every bite of your Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins is a delightful experience, with a crunchy topping juxtaposed to the creamy filling.
Step 9: Bake
Place the muffin tin in the preheated oven and bake for 25-30 minutes. You’ll know they’re ready when the muffins are golden brown and a toothpick inserted comes out clean—though the creamy layer may cling slightly, that’s perfectly normal!
Step 10: Rest Before Serving
Once baked, allow the muffins to cool in the tin for 10 minutes. This resting period lets the residual heat finish cooking the cream cheese layer while making it easier to remove the muffins from the tin without falling apart. Prepare for a cozy treat!

How to Store and Freeze Gluten Free Coffee Cake
Fridge: Keep the muffins in an airtight container in the fridge for up to 1 week. This helps maintain their moist texture and flavor while keeping them fresh.
Room Temperature: If you plan to enjoy your muffins within 2 days, storing them in a covered container at room temperature works well to keep them soft and tasty.
Freezer: For longer storage, freeze the muffins individually wrapped in plastic wrap or in a freezer-safe bag for up to 3 months. This allows you to enjoy a delightful gluten-free treat whenever the craving strikes!
Reheating: To enjoy, simply thaw at room temperature, or pop them in the microwave for about 15-20 seconds for a warm, comforting snack.
Make Ahead Options
These Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins are perfect for meal prep enthusiasts! You can prepare the muffin batter up to 24 hours in advance by mixing the wet and dry ingredients separately, ensuring to keep them refrigerated until you’re ready to bake. Additionally, the cream cheese filling can be mixed and stored in an airtight container in the refrigerator for the same timeframe, maintaining its creamy texture. When you’re ready to bake, simply fill the muffin liners with the batter, dollop on the cream cheese filling, add the crumble topping, and bake as instructed. This way, you’ll have freshly baked muffins with minimal effort, making your mornings a breeze!
Gluten Free Coffee Cake Muffin Variations
Customize these delicious muffins to suit your taste and bring a delightful personal touch to your baking!
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Flavored Yogurt: Use different flavored Greek yogurt, like vanilla or honey, to enhance the muffin’s taste with a subtle twist.
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Fruity Boost: Fold in seasonal fruits like blueberries or raspberries into the batter for a burst of fruity flavor that complements the sweet cinnamon.
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Nutty Crunch: Add 1/4 cup chopped walnuts or pecans to the crumble for a lovely nutty texture that pairs wonderfully with the cream cheese.
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Vegan Delight: Substitute the egg with 1/4 cup unsweetened applesauce and use vegan butter or margarine; enjoy a completely vegan muffin!
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Spicy Kick: Experiment with spices like ginger or cardamom in the crumble to create a warm, aromatic flavor profile; perfect for cozy mornings.
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Cinnamon Swirl: Incorporate a cinnamon sugar swirl into the batter before adding the cream cheese layer for an extra sweet surprise in every bite.
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Less Sweet Option: Reduce the sugar in the muffin batter and cream cheese layer to enjoy a less sweet, yet equally satisfying muffin experience—perfect for breakfast.
Don’t forget to serve these muffins warm alongside a cup of coffee or tea. If you’re looking for more delicious pairings, try them with delightful Buttermilk Pancakes Breakfast or indulge in a slice of Chocolate Lava Cakes for an unforgettable brunch experience!
What to Serve with Gluten Free Coffee Cake Muffins
Savoring these muffins is just the beginning; let’s create a memorable meal around them!
- Fresh Fruit Salad: A colorful medley of seasonal fruits provides a refreshing contrast, balancing the sweet richness of the muffins. Think juicy berries and tropical slices!
- Crispy Bacon: The savory, salty crunch of bacon pairs wonderfully, cutting through the sweetness and adding a satisfying texture that keeps you coming back for more.
- Smooth Greek Yogurt Parfait: Layer creamy yogurt with crunchy granola and a drizzle of honey for a delightful contrast to the muffins, enhancing the breakfast experience.
- Warm Honey Drizzle: Drizzling honey over the muffins will amplify their sweetness and create an indulgently luscious finish, enhancing their bakery-style charm.
- Coffee or Tea: A classic pairing, the warm notes of a good brew highlight the flavors in the muffins, making for a cozy morning ritual or afternoon treat.
- Cinnamon-Spiced Applesauce: A side of homemade applesauce sprinkled with cinnamon brings a comforting, homey touch, enhancing the warm spices of the muffins in every bite.
- Chocolate-Covered Strawberries: For a touch of dessert indulgence, this sweet, tart treat adds elegance to your meal while complementing the muffins’ flavors beautifully.
Expert Tips for Gluten Free Coffee Cake Muffins
- Softened Cream Cheese: Ensure your cream cheese is at room temperature for smooth mixing, preventing lumps in your filling.
- Quality Cinnamon: Use Ceylon cinnamon for a milder, sweeter flavor; regular cinnamon can overpower the delicate muffin.
- Don’t Overmix: Mix the batter until just combined. Overmixing can lead to dense muffins instead of the light, fluffy texture you desire.
- Cooling Time: Allow the muffins to cool slightly in the tin. This step helps set the cream cheese layer and makes them easier to remove.
- Check for Doneness: Always check with a toothpick, but remember the cream cheese layer may stick; look for golden tops as a good indicator.

Gluten Free Cinnamon Cream Cheese Coffee Cake Muffins Recipe FAQs
What type of gluten-free flour should I use?
Absolutely! I recommend using Bob’s Red Mill 1-to-1 gluten-free flour, as it mimics the texture of regular flour quite well. If you’d like to try another blend, make sure it contains xanthan gum, which helps with the structure. Just keep in mind that results may vary based on the specific flour blend you choose, so testing it out is key!
How should I store these muffins?
You can store your muffins in an airtight container at room temperature for up to 2 days. If you’d like to keep them longer, transferring them to the refrigerator extends their freshness for up to a week. Just make sure they’re stored properly to maintain their fluffy texture!
Can I freeze these muffins?
Definitely! To freeze your Gluten Free Coffee Cake Muffins, first allow them to cool completely. Then, wrap each muffin tightly in plastic wrap or place them in a freezer-safe bag. They can be stored in the freezer for up to 3 months. When you’re ready to enjoy, simply thaw them at room temperature or pop them in the microwave for about 15-20 seconds for a fresh-out-of-the-oven taste!
How can I troubleshoot if my muffins are too dense?
The consistency of your muffins can depend on a few key factors. First, be careful not to overmix the batter; mixing just until combined helps maintain a light and fluffy texture. Additionally, make sure your baking soda and powder aren’t expired, as this could prevent them from rising properly. Lastly, ensure you’re measuring your flour correctly—using a food scale can help with accuracy, as too much flour can lead to density.
Are these muffins safe for my gluten-sensitive friends?
Yes, indeed! These muffins are gluten-free, making them suitable for those with gluten sensitivities or celiac disease. Just ensure that all ingredients, including the gluten-free flour and any additional flavorings, are certified gluten-free to guarantee they’re safe for your loved ones to enjoy!

Delicious Gluten Free Coffee Cake Muffins You’ll Savor!
Ingredients
Equipment
Method
- Preheat the oven to 350°F (175°C) and line a 6-count muffin tin with paper liners.
- In a stand mixer, combine the wet ingredients and mix on medium speed until smooth and creamy, about 2-3 minutes.
- In a separate bowl, whisk together the dry ingredients for even blending.
- Slowly add the dry mixture to the wet mixture, mixing on low until just combined.
- Fill each muffin liner about halfway with the batter.
- In a bowl, mix the cream cheese, egg, and sugar until slightly lumpy and dollop generously on top of each muffin batter.
- In another bowl, mix the crumble ingredients until it resembles wet sand, then sprinkle over the cream cheese layer.
- Bake for 25-30 minutes until golden brown and a toothpick comes out clean.
- Allow muffins to cool in the tin for 10 minutes before serving.
